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ORF
(1/3) ORF prediction on a FASTA formatted DNA sequence

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Predicts ORFs in bacterial genomes on a FASTA input DNA sequence by using either Glimmer 2.1 (PMID 9421513) and RBSfinder, ZCurve_V (PMID 16401352), or GeneMark.hmm (PMID 9461475).
Since RBS finder (used for Glimmer output) does not handle correctly ORFs that traverse the ORI, the Glimmer 2.1 software was patched to alternatively select these ORI-traversing ORFs.

Output is a genbank file and a FASTA containing the DNA sequences of the ORFs.


Data Submission Form

Your data will be processed on the MolGen linux server and the results will be made available on the results page which can be bookmarked.
The data will be stored on our server for up to three weeks and will be kept confidential.

ORF prediction needs a fasta formatted file (example) with 1 sequence.
Select a FASTA formatted single DNA sequence to upload



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